! Last change: DOS 3 Aug 2000 5:27 pm ! *** copyright 2000 *** ! *** filename mh3.f95 *** John F. Monahan ** ! ********************** program mh3 ! mh3 -- third trial of Metropolis-Hastings algorithm ! using log-series posterior ! and independence chain, uniform trial distribution ! with Gelman-Rubin replications implicit none integer, parameter :: nn = 10 integer, parameter :: n = 2**nn ! sample size integer, parameter :: k = 16 ! number of replications integer t,i,j,kaccept,nd complex, dimension(n) :: x real pstarold,pstarnew,told,tnew,ltn,lp,alpha real fn,s0,xt,sse,sbar,xbardd,bigb,ran real, dimension(k) :: xbari ! 21 FORMAT('sample size',i3,'* 2**',i2,' =',i9,' with',i9,' accepts') 22 FORMAT('rep',i4,' mean, cum sse, spectral var',3f14.8) 23 FORMAT('bandwidth d=',i4,', spectral var est',f14.8) 24 FORMAT(/' Results from k=',i4,' replications of length',i8 & & /'grand mean',f14.8,' between ss',f14.8,' sse',f14.8) ! open( unit=6, file='mh3.out' ) ! calculations and initializations nd = 2**(nn/2) fn = 2.**nn sse = 0. ! error ss sbar = 0. ! mean of spectral variances tnew = ran(5151917) kaccept = 0 do i = 1,k ! replication loop ! initialize xbari(i) = 0. told = ran(5151917) ! initial value from uniform(0,1) pstarold = 0. ! wrong, but it shouldn't matter ! main loop do t = 1,n tnew = ran(t) ! independence chain ! get pstar for tnew pstarnew = 0. if ( (tnew .GT. 0. ) .AND. (tnew .LT. 1.) ) then ltn = log(1.-tnew) lp = 16.*log(tnew) + ltn - 10.*log(-ltn) if ( lp > -60. ) pstarnew = exp(lp) end if ! get alpha if ( pstarnew .lt. pstarold ) then alpha = pstarnew / pstarold else alpha = 1. end if if ( ran(t) .lt. alpha ) then ! acceptance kaccept = kaccept + 1 told = tnew pstarold = pstarnew end if ! output xt = told x(t) = xt ! replication statistics xbari(i) = xbari(i) + xt if( t .ne. 1 ) sse = sse + ( (t*xt-xbari(i))**2 )/real(t*(t-1)) end do ! end main loop xbari(i) = xbari(i)/fn ! get spectral density estimate at 0. call fft2n(x,nn,1.) s0 = conjg(x(2))*x(2)/2. ! just to match SAS do j = 1,nd s0 = s0 + conjg(x(j+1))*x(j+1) end do s0 = (2./fn) * s0 / real(2*nd+1) ! just to match SAS sbar = sbar + s0 write(6,22) i,xbari(i),sse,s0 end do ! end replication loop write(6,21) k,nn,k*n,kaccept ! process replication statistics xbardd = 0. ! grand mean bigb = 0. ! between ss do i = 1,k xbardd = xbardd + xbari(i) if( i .ne. 1 ) bigb = bigb + & & ((i*xbari(i)-xbardd)**2) / real(i*(i-1)) end do ! loop on i xbardd = xbardd / real(k) ! mean of means bigb = bigb * fn ! between ss sbar = sbar / real(k) ! mean of spectral variances write(6,23) nd,sbar write(6,24) k,n,xbardd,bigb,sse end program mh3 REAL FUNCTION RAN(IDUM) ! UNIFORM PSEUDORANDOM NUMBER GENERATOR ! A LINEAR CONGRUENTIAL GENERATOR X(N+1) = MOD( A*X(N), 2**31 - 1 ) ! CODING FOLLOWS ALGORITHM 1 OF HORMANN AND DERFLINGER, WITH ! PERSONAL MODIFICATIONS TO AVOID OVERFLOWS ! ! W. HORMANN & G. DERFLINGER (1993) "A PORTABLE RANDOM NUMBER GENERATOR ! WELL SUITED FOR THE REJECTION METHOD," ACM TOMS VOL 19, PP.489-495. ! ! ARGUMENT ! IDUM INTEGER FIRST CALL SETS SEED, IGNORED IN SUBSEQUENT CALLS ! IMPLICIT NONE INTEGER, INTENT(IN) :: IDUM INTEGER, PARAMETER :: AHI = 12121 ! PART OF MULTIPLIER INTEGER, PARAMETER :: ALOW = 23166 ! PART OF MULTIPLIER INTEGER, PARAMETER :: ALOW2 = 46332 ! PART OF MULTIPLIER INTEGER, PARAMETER :: B15 = 32768 ! 2**15 INTEGER, PARAMETER :: B16 = 65536 ! 2**16 INTEGER, PARAMETER :: P = 2147483647 ! MODULUS 2**31 - 1 INTEGER, SAVE :: XHI = 0 INTEGER, SAVE :: XLOW = 0 INTEGER MID1,MID2,MID,X,K ! ! IF NOT FIRST CALL, THEN SKIP SETTING SEED IF( (XHI .EQ. 0) .AND. (XLOW .EQ. 0) ) THEN XHI = IDUM / 65536 XLOW = IDUM - XHI*65536 END IF ! ( FIRST CALL ) ! MULTIPLIER IS A = 397204094 = AHI*(2**15) + ALOW MID1 = AHI*XLOW MID2 = ALOW2*XHI ! TEST FOR OVERFLOW IF( MID1-1 .GT. P-MID2 ) THEN ! HERE MID IS > 2**31, SO WRITE AS MID - 2**31 MID = (MID1-1) - (P-MID2) K = 1 ELSE ! HERE MID IS < 2**31, SO WRITE AS POSITIVE MID = MID1 + MID2 K = 0 END IF ! ( MID1-1 .GT. P-MID2 ) ! NOW GET TO MAIN STEP ! SUBTRACT P = 2**31 - 1 IN ADVANCE MID2 = MID / B16 X = (ALOW*XLOW - P) + AHI*XHI + MID2 + K*B15 IF( X .LT. 0 ) X = X + P X = X + ( ( MID - MID2*B16 )*B15 - P ) IF( X .LT. 0 ) X = X + P ! WILL NEED TWO PARTS OF X FOR NEXT CALL XHI = X / B16 XLOW = X - XHI*B16 ! 2**16 2**15 RAN = ( REAL(XHI) + ( REAL(XLOW) / 65536. ) )/32768. RETURN END FUNCTION RAN SUBROUTINE FFT2N(A,N,SGN) ! ! SUBROUTINE FFT2N -- DISCRETE FOURIER TRANSFORM ! ! A COMPLEX VECTOR INPUT: VECTOR TO BE TRANSFORMED ! OUTPUT: TRANSFORMED VECTOR ! N INTEGER INPUT: LOG(BASE 2) OF LENGTH OF VECTOR A ! LENGTH OF A IS 2 ** N ! SGN REAL INPUT: INDICATES FORWARD OR INVERSE TRANSFO ! SGN = 1. THEN FORWARD TRANSFORM ! SGN = -1. THEN INVERSE TRANSFORM ! ! DISCRETE FOURIER TRANSFORM OF A VECTOR A(J) IS GIVEN BY ! NN-1 ! T( A ) = SUM A(J) EXP( - I SGN 2 PI J K / NN ) ! J K=0 ! ! WHERE I = SQRT( -1 ) ! NN = 2 ** N ! PI = 3.1415923565... ! ! NOTE THAT THE INDEXING OF A IS SHIFTED BY ONE -- ! A(0) STORED IN A(1), ... , A( NN-1 ) STORED IN A( NN ) ! ! J F MONAHAN (NOV,1984) DEPT OF STAT, N C S U, RALEIGH, N C 27695-8203 ! RECODED DECEMBER 1999, APRIL 2000 FOR FORTRAN 95 ! ! THIS IS A 'POWER OF 2' ALGORITHM BASED ON THE PRESENTATION IN ! ! A. V. AHO, J. E. HOPCROFT, AND J. D. ULLMAN (1974) THE DESIGN AND ! ANALYSIS OF COMPUTER ALGORITHMS, ADDISON-WESLEY, READING. ! ! ! BEGIN WITH DECLARATIONS IMPLICIT NONE INTEGER, INTENT(IN) :: N COMPLEX, DIMENSION(1:N), INTENT(IN OUT) :: A REAL, INTENT(IN) :: SGN REAL C,S COMPLEX, DIMENSION(25) :: WK COMPLEX WS,ALEFT,ARIGHT LOGICAL CARRY,NEW LOGICAL, DIMENSION(25) :: RBITS INTEGER I,J,L,LM,LL,M,MM,M2,NN ! ! COMPUTE WK(I) = EXP( - 2 PI IMAG SGN / 2**I ) ! ! SPECIAL VALUES FIRST WK(1) = CMPLX( -1., 0. ) WK(2) = CMPLX( 0., -SGN ) ! SKIP IF N IS ONLY 1 OR 2 IF( N .GT. 2 ) THEN ! AVOID SINES AND COSINES -- JUST USE SQUARE ROOTS C = 0. S = 1. DO I = 3,N C = SQRT( ( 1. + C ) / 2. ) S = S / ( 2.*C ) WK(I) = CMPLX( C, -SGN*S ) END DO ! LOOP ON I END IF ! ( N .GT. 2 ) ! ! THIS IS THE MAIN LOOP OF THE ALGORITHM ! DO MM = 1,N ! CONVERT TO REVERSE LOOP M = N - MM ! M STEPS DOWN FROM N-1 TO 0 ! ! INITIALIZE DO I = 1,N RBITS(I) = .TRUE. END DO ! LOOP ON I ! M2 M2 = 2**M ! LM CONTROLS THE NUMBER OF SUBLOOPS LM = 2**(MM-1) ! DO LL = 1,LM ! L IS THE MAJOR INDEX VARIABLE L = 2*M2*(LL-1) ! INITIALIZE TO GET W ** REV( L / M2 ) WS = CMPLX(1., 0.) CARRY = .TRUE. ! START AT 2 (SHIFT) SINCE L/M2 IS ALWAYS EVEN DO I = 2,N NEW = CARRY .OR. RBITS(I) CARRY = CARRY .AND. RBITS(I) RBITS(I) = NEW .AND. ( .NOT. CARRY ) IF( RBITS(I) ) WS = WS * WK(I) END DO ! LOOP ON I ! WS IS NOW W ** REV( L / M2 ) ! NOW DO THE REAL COMPUTATION DO J = 1,M2 ALEFT = A( L + J ) ARIGHT = WS*A( L + J + M2 ) A( L + J ) = ALEFT + ARIGHT A( L + J + M2 ) = ALEFT - ARIGHT END DO ! LOOP ON J ! DONE WITH LOOP ON L END DO ! LOOP ON LL ! DONE WITH MAIN LOOP ON M END DO ! LOOP ON MM ! ! SCRAMBLE THE NUMBERS -- SWITCH A(J) AND A( REV(J) ) ! BUT DON'T DO IT TWICE ! INITIALIZE DO I = 1,N RBITS(I) = .TRUE. END DO ! LOOP ON I NN = 2 ** N ! LOOP THROUGH ALL THE NUMBERS DO LL = 1,NN ! DO THE BIT REVERSAL LM = 0 M2 = NN CARRY = .TRUE. ! START AT 1 HERE -- USE ALL THE NUMBERS DO I = 1,N M2 = M2 / 2 NEW = CARRY .OR. RBITS(I) CARRY = CARRY .AND. RBITS(I) RBITS(I) = NEW .AND. ( .NOT. CARRY ) IF( RBITS(I) ) LM = LM + M2 END DO ! LOOP ON I ! DON'T SWITCH TWICE IF( LL-1 .LT. LM ) THEN ALEFT = A(LL) ARIGHT = A(LM+1) A(LL) = ARIGHT A(LM+1) = ALEFT END IF ! ( LL-1 .LT. LM ) END DO ! LOOP ON LL ! IF INVERSE TRANSFORM, REMEMBER TO DIVIDE BY NN IF( SGN .GT. 0. ) RETURN C = REAL(NN) DO I = 1,NN A(I) = A(I) / C END DO ! LOOP ON I RETURN END SUBROUTINE FFT2N ! *** end of filename mh3.f95 *********************