Jung-Ying Tzeng
Associate Professor

Publications

Maity A., Sullivan P.F., Tzeng J.Y. (2012)
Multivariate Phenotype Association Analysis by Marker-Set Kernel Machine Regressions.
Submitted
Tzeng J.Y., Lu W., Hsu F.C. (2012)
Gene-level pharmacogenetic analysis on survival outcomes by gene-trait similarity regression.
Submitted
Pongpanich M, Neely M., Tzeng J.Y. (2011)
On the aggregation of multimarker information for marker-set and sequencing data analysis: genotype collapsing vs. similarity collapsing.
Frontiers in Statistical Genetics and Methodology. Accepted [Paper]
Tzeng J.Y., Zhang D., Pongpanich M., Smith C., McCarthy M.I., Sale, M.M., Bradford B.W., Hsu, F.C., Thomas D.C., Sullivan P.F. (2011)
Detecting gene and gene-environment effects of common and uncommon variants on quantitative traits: A marker-set approach using gene-trait similarity regression.
The American Journal of Human Genetics. 89:277-88. [Paper] [Software Download and Documentation]
Lee M.H., Tzeng J.Y., Huang S.Y., Hsiao C.K. (2011)
Combining an evolution-guided clustering algorithm and haplotype-based likelihood ratio test in family-based association studies.
BMC Genetics. 12:48. [Paper]
Koehler M., Bondell H., Tzeng J.Y. (2010)
Evaluating Haplotype Effects in Case-Control Studies via Penalized-Likelihood Approaches: Prospective or Retrospective Analysis?.
Genetic Epidemiology. 34:892-911. [Paper] [R-Code]
Pongpanich M, Sullivan P.F., Tzeng J.Y. (2010)
A Quality Control Algorithmm for Filtering SNPs in Genomewide Association Studies.
Bioinformatics. 15:1731-7. [Paper] [Software Download and Documentation]
Tzeng J.Y.*, Lu W.*, Farmen M.W., Liu Y., Sullivan P.F. [* Equal Contribution] (2010)
Haplotype-based Pharmacogenetic Analysis for Longitudinal Quantitative Traits in the Presence of Dropout.
Journal of Biopharmaceutical Statistics (Special Issue of Statistical Genomics in Clinical Trials). 20:334-50. [Paper] [R-Code]
Tzeng J.Y., Bondell H. (2010)
A Comprehensive Approach to Haplotype Specific Analysis via Penalized Likelihood.
European Journal of Human Genetics. 18:95-103. [Paper] [Software Download and Documentation]
Liu Y., Li Y.J, Satten G., Allen A.S., Tzeng J.Y. (2009)
A Regression-Based Association Test Using Inferred Ancestral Haplotype Similarity.
Annals of Human Genetics. 73:520-526. [Paper]
Tzeng J.Y., Zhang D., Chang S.M., Thomas D.C., Davidian M. (2009)
Gene-Trait Similarity Regression for Multimarker-based Association Analysis.
Biometrics. 65:822-32. [Paper] [Software Download and Documentation]
Sullivan P, de Geus E, Willeen G, James MR, Smit JH, Zandbelt T, Arolt V, Baune BT, Blackwood D, Cichon S, Coventry WL, DohkeM, Farmer A, Fava M, Gordon SD, He Q, Heath A, Heutink P, Holsboer F, Hoogendijk WJ, Hottenga JJ, Hu Y, Kohli M, Lin D, Lucae S, MacIntyre DJ, Maier W, McGhee KA, McGuffin P, Montgomery G, Muir WJ, Nolen W, Nothen MM, Perlis RH, Pirlo K, Posthuma D, Rietschel M, Rizzu P, Schosser A, Smit AB, Smoller JW, Tzeng J.Y., van Dyck R, Verhage M, G. ZF, Martin NG, Wray NR, Booma DI, Penninx B. (2009)
Genomewide Association for Major Depressive Disorder: a Possible Role for the Presynaptic Protein Piccolo.
Molecular Psychiatry 14:359-375. [Paper]
Psychiatric GWAS Consortium Coordinating Committee. (2009)
Genomewide Association Studies: History, Rationale, and Prospects for Psychiatric Disorders.
The American Journal of Psychiatry. 166:540-556. [Paper]
Jones M.L., Epstein M.P., Kao J.T., Allen A.S., SattenG.A., Tzeng J.Y. (2008)
Retrospective Haplotype Clustering Methods for Detecting Haplotypes Effects and Haplotype-Environment Interactions.
Institute of Statistics MimeoSeries No. 2611 [Paper]
Sullivan P.F., Lin D., Tzeng J.Y., van den OordE.J.C.G., Perkins D., Stroup T.S., Wagner M., Lee S., Wright F.A., Zou F., Liu W., Downing A.C., Lieberman J.A., Close S.L. (2008)
Genomewide association for schizophrenia in the CATIE study.
Molecular Psychiatry.13:570-84. [Paper]
Tzeng J.Y., Zhang D. (2007)
Haplotype-based association analysis via variance component score test.
The American Journal of Human Genetics. 81:927-938. [Paper] [Software Download and Documentation]
Tzeng J.Y., Wang C.H., Kao J.T., and Hsiao C.K. (2006)
Regression-based association analysis with clustered haplotypes using genotypes.
The American Journal of Human Genetics, 78:231-242. [Paper] [R-Code]
Tzeng J.Y. and Roeder K. (2006)
Comment on "Likelihood-based inference on haplotype effects in genetic association studies".
Journal of the American Statistical Association, 101:111-114.
Wen S.H, Tzeng J.Y., Kao J.T., and Hsiao C.K. (2006)
A two-stage design for multiple testing in large-scale association studies.
Journal of Human Genetics, 51:523-532. [Paper]
Tzeng J.Y. (2005)
Evolutionary-based Grouping of Haplotypes in Association Analysis.
Genetic Epidemiology, 28:220-231. [Paper]
Tzeng J.Y., Byerley W., Devlin B., Roeder K. and Wasserman L. (2003)
Outlier detection and false discoveryrates for whole-genome DNA matching.
Journal of the American Statistical Association, 98:236-246. [Paper]
Tzeng J.Y., Devlin B., Wasserman L. and Roeder K. (2003)
On the identification of disease mutations by the analysis of haplotype similarity and goodness-of-fit.
The American Journal of Human Genetics, 72:891-902. [Paper] [R-Code]
Hsiao C.K., Tzeng J.Y., and Wang C.H. (2000)
Comparing the performance of two indexes for spatial model selection: applications to two mortality data.
Statistics in Medicine, 19:1915-1930. [Paper]
Hsiao C.K., Chen C.J., Shih Y.-F., Lin LL.-K., Hung P.T., Yao C.L., Su T.C., Lin T.C., Tzeng J.Y., and Chen Y. (2000)
Design and statistical analysis for the myopia intervention trial in Taiwan.
In Lin, L.L.-K., Shih, Y.-F. and Hung, P.T. (Eds.), MyopiaUpdates II (pp. 161-164). Springer-Verlag, Tokyo.
Tzeng J.Y., Hsiao C.K. and Chen C.J. (1998)
Spatial model selection using Bayes factor and ratio of variabilities for asthma mortality data.
Chinese Journal of Public Health, 17:158-169.
Cheng Y.H. and Tzeng J.Y. (1997)
Chinese version of "Primer of Biostatistics (4th ed.) by Glantz, S.A.".
McGraw-Hill, Taipei